Protein Info for Psest_1005 in Pseudomonas stutzeri RCH2

Annotation: sugar fermentation stimulation protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 235 TIGR00230: sugar fermentation stimulation protein" amino acids 2 to 228 (227 residues), 213 bits, see alignment E=1.9e-67 PF17746: SfsA_N" amino acids 13 to 80 (68 residues), 78.7 bits, see alignment E=2.9e-26 PF03749: SfsA" amino acids 84 to 223 (140 residues), 149.3 bits, see alignment E=6.4e-48

Best Hits

Swiss-Prot: 77% identical to SFSA_PSEAE: Sugar fermentation stimulation protein homolog (sfsA) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

KEGG orthology group: K06206, sugar fermentation stimulation protein A (inferred from 89% identity to psa:PST_3287)

Predicted SEED Role

"Sugar/maltose fermentation stimulation protein homolog" in subsystem Fermentations: Mixed acid

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GJT6 at UniProt or InterPro

Protein Sequence (235 amino acids)

>Psest_1005 sugar fermentation stimulation protein (Pseudomonas stutzeri RCH2)
MRFAQPLEQGRLVKRYKRFLADIVTDEGEALCIHCPNTGSMLNCMEEGARVWFQRSSDPR
RKLPGTWELVETPQGRLACVNTARANPLIEEALLNGQITELAGFTMLKREVAYGVENSRV
DFRLDYAGIAAFVEVKSVTLGFADTAVAAFPDAVTLRGAKHLRELAALARAGVRAVQLYC
VNLSGVEAVRPAQEIDPVYAAALRDAVAAGVEVLAYGVDLSPTELRISGRLPVLL