Protein Info for Psest_1000 in Pseudomonas stutzeri RCH2

Annotation: PAS domain S-box

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 984 transmembrane" amino acids 6 to 27 (22 residues), see Phobius details amino acids 45 to 66 (22 residues), see Phobius details amino acids 72 to 93 (22 residues), see Phobius details amino acids 115 to 137 (23 residues), see Phobius details amino acids 157 to 173 (17 residues), see Phobius details amino acids 185 to 211 (27 residues), see Phobius details amino acids 241 to 259 (19 residues), see Phobius details amino acids 279 to 298 (20 residues), see Phobius details amino acids 322 to 351 (30 residues), see Phobius details amino acids 376 to 394 (19 residues), see Phobius details amino acids 400 to 422 (23 residues), see Phobius details amino acids 430 to 451 (22 residues), see Phobius details amino acids 471 to 493 (23 residues), see Phobius details TIGR00229: PAS domain S-box protein" amino acids 633 to 748 (116 residues), 24.9 bits, see alignment E=9.5e-10 PF00512: HisKA" amino acids 758 to 819 (62 residues), 41.2 bits, see alignment 2.1e-14 PF02518: HATPase_c" amino acids 865 to 975 (111 residues), 93.2 bits, see alignment E=2.2e-30

Best Hits

KEGG orthology group: None (inferred from 98% identity to psa:PST_3292)

Predicted SEED Role

"Two-component sensor CbrA: intrcellular carbon:nitrogen balance"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GJS8 at UniProt or InterPro

Protein Sequence (984 amino acids)

>Psest_1000 PAS domain S-box (Pseudomonas stutzeri RCH2)
MQTSFSLSHLILISAAYLFMLFGVAWVSERGLIPRWIIRHPLTYTLSLGVYASAWAFYGT
VGLAYQYGYGFLATYLGVCGAFLLAPVLLYPILRITRTYQLSSLADLVAFRFRSTWSGAL
TTIVMLIGMLPLLALQIQAVADAIGILTLEPLQERVALGYCLMIMLFTILFGARHIATRE
KHEGLVFAIAFESIVKLVTFGAIGLYALYVVFGGPHQLEIWLLQNQSALQALHTPLQEGP
WRTLLLVFFASAIVMPHMYHMTFTENLNPRGLVSASWGLPLYLLLMSLAVPLILWAGLKL
GVSTNPEYFTLGLGLAAQSETLALLAFVGGLSASSGLIIVSTLALSGMALNHLVLPLYQP
SSEGNIYRWLKWTRRSLIFAIIMAGYGFYLLLGAEQDLSNLGIVAFVATLQFLPGVLSVL
YWPTANRRGYIAGLLGGIGVWVVTMLLPLVGNLDGFYIPLFNVVYVLDDTSWHLAAIASL
AVNVLAFSLFSIFSETSPEEQSAAEACAVENVRRPQRRELMAASPQEFATQLAKPLGAKT
AQREVEQALRDLQLPFDEHRPYALRRLRDRIEANLSGLMGPSVAQDIVENFLPYKNGAEG
YITEDIHFIESRLEEYHSRLTGLAAELDALRRYHRQTLQELPMGVCSLAKDQEILMWNRA
LEELTEIPALQVVGSRLSTIAEPWRSLLSDFIEQADEHLHKQRLAHNGHRRCLNLHKAAI
AEPLAPGNSGLVLLVEDLTETQQLEDRLVHSERLASIGRLAAGVAHEIGNPITGIACLAQ
NLRDEREDDGEIVEISAQIIEQTKRVSRIVQSLMSFAHAGERQHQLYPVSLAQVTQDAIG
LLSLNRNRTEVQFINLCHPDHVAEGDPQRLAQVLINLLSNARDASPQGGVIRISSEVAEQ
TVYLVVEDEGSGIPKDIQDRLFEPFFTTKDPGEGTGLGLALVYSIIEEHYGQIDIDSPAD
PETQRGTRFRITLPRHVEASHAVS