Protein Info for PGA1_c09720 in Phaeobacter inhibens DSM 17395

Annotation: DNA repair protein RecN

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 548 TIGR00634: DNA repair protein RecN" amino acids 1 to 546 (546 residues), 478.1 bits, see alignment E=2.6e-147 PF13476: AAA_23" amino acids 5 to 52 (48 residues), 38.2 bits, see alignment 3.6e-13 PF02463: SMC_N" amino acids 14 to 502 (489 residues), 54.6 bits, see alignment E=1.6e-18

Best Hits

KEGG orthology group: K03631, DNA repair protein RecN (Recombination protein N) (inferred from 80% identity to sit:TM1040_0692)

Predicted SEED Role

"DNA repair protein RecN" in subsystem DNA-replication or DNA repair, bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7DNN0 at UniProt or InterPro

Protein Sequence (548 amino acids)

>PGA1_c09720 DNA repair protein RecN (Phaeobacter inhibens DSM 17395)
MLRALDIRDILIIDHLELNFQPGLNVLTGETGAGKSILLDSLGFVLGWRGRAELVRQGAK
QGEVLAEFDLTPEHPAHAVLAEAGLPGGDTLLLRRVNTAEGRKTAWVNDRRCSGEVLRAL
SDTLLELHGQHDDRGLLNPRGHRAMLDEFAGLGDMLASVRDLWATASRARKAVEETRSAL
EAIRAEEDFLRHAVAELDALDPQPGEDAALDQRRREMQSAERIRGDIQRAQGILADGAEA
ALGDAQRWLEGVSDQAENALDAPIAALLRAMIELGEAQDGVARVLDGLEFNPGELEESEE
RLFAIRALARKHDVLPDDLGGYAETLREKLAAVDAGDQDLADQEAALAEAEAAYAGAAAQ
LSAARRETAAALDTAVMAELAPLKMERAVFETRLSDAEPGPEGKDAVAFTVATNPGAPAG
PLNKIASGGELSRFLLALKVCLRGETGNQTMIFDEIDRGVGGATADAVGRRLKSLAEGSQ
VLVVTHSPQVAAQGAHHWRVQKQVIDGQTLSQVVPLDEGERVDELARMVSGDTITPEARA
AAKALLAG