Protein Info for Psest_0095 in Pseudomonas stutzeri RCH2

Annotation: phosphonate C-P lyase system protein PhnH

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 202 PF05845: PhnH" amino acids 12 to 194 (183 residues), 196.9 bits, see alignment E=1.4e-62 TIGR03292: phosphonate C-P lyase system protein PhnH" amino acids 13 to 193 (181 residues), 176.4 bits, see alignment E=2.6e-56

Best Hits

KEGG orthology group: K06165, PhnH protein (inferred from 64% identity to pap:PSPA7_1750)

Predicted SEED Role

"PhnH protein" in subsystem Alkylphosphonate utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GDA0 at UniProt or InterPro

Protein Sequence (202 amino acids)

>Psest_0095 phosphonate C-P lyase system protein PhnH (Pseudomonas stutzeri RCH2)
MHRAPSDLLQAAFADPVLDAQKCFRAALKALSEPGTRQPLVSVAAIEPLQAAGYALCLSL
LDNDTPLWLAPAFDTPAIRTNLAFHCGCPIVETRGEAMFALLDAAALDDLSGFYAGSERY
PDQSCTLLIQLEHLDRGPALSWQGPGIDGSRLVGLPLAPAFWQQRAARNDFPRGLDALIC
ADGEVLGLPRSTRIGDSLQEVA