Protein Info for Psest_0951 in Pseudomonas stutzeri RCH2

Annotation: FAD/FMN-containing dehydrogenases

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 PF01565: FAD_binding_4" amino acids 50 to 185 (136 residues), 118.7 bits, see alignment E=4.7e-38 PF02913: FAD-oxidase_C" amino acids 276 to 522 (247 residues), 212.4 bits, see alignment E=2.7e-66 PF13183: Fer4_8" amino acids 546 to 617 (72 residues), 40.3 bits, see alignment 1.1e-13 PF13534: Fer4_17" amino acids 548 to 618 (71 residues), 32.4 bits, see alignment 3.3e-11 PF12838: Fer4_7" amino acids 548 to 617 (70 residues), 38.5 bits, see alignment 4e-13 PF02754: CCG" amino acids 714 to 806 (93 residues), 19.7 bits, see alignment E=2.2e-07

Best Hits

KEGG orthology group: None (inferred from 97% identity to psa:PST_3340)

Predicted SEED Role

"Predicted D-lactate dehydrogenase, Fe-S protein, FAD/FMN-containing" in subsystem Lactate utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GJP1 at UniProt or InterPro

Protein Sequence (950 amino acids)

>Psest_0951 FAD/FMN-containing dehydrogenases (Pseudomonas stutzeri RCH2)
MNAAAQLERAPLPAEFLREVERVIPVERRFDDPLSTLAFGTDASFYRLIPKLVVRVESEA
EVIALLKLAHAENVPVTFRAAGTSLSGQAISDSVLIVLGDNWNGREIRNGGEQIRLQPGV
IGANANAVLAPFQRKIGPDPASINAAKIGGIVANNSSGMCCGTAQNTYKTLAGLRVVLAD
GTVVDSEDAASVDAFRQSHAALLEQLAELGRETRANSELAAKIRHKYRLKNTTGFSLNAL
VDYDEPLDILNHLMVGSEGTLGFISAVTYDTVPDHPHKASALVVFPDVETCCLAVPVLKQ
QPVSAVELLDRRSLRSVEHKVGMPEWVKELSPTACALLIESRAASQSLLHEQINLIMTSI
AHFPVEKQVDFSEDPVIYNQLWKIRKDTFPAVGAVRQTGTTVIIEDVTFPVERLAEGVNR
LIELLDKHRYDEAILFGHALEGNLHFVFTQGFDDPAQVARYEAFMGEVAQLVAVEFGGAL
KAEHGTGRNMAPFVELEWGSEAYALMWKIKRLLDPTGILNPDVVLSEDPDIHLKNLKPMP
AADEIVDKCIECGFCEPVCPSNGLTLTPRQRIVIWRDIQARKRAGVDTTEIERLYHYHGI
ETCAATGLCAQRCPVGINTGDLIRKLRGREASKTGAANWLADHFATAVQGTRFMLHAANG
AHIILGTKRLAKLSATMTNASKGRVPQWTPATPQPLQRLHLPKPTAQDERPRVVYLAACV
SRAMAPAARDQEQEPLLDKTRSLLEKAGYQVIFPEQLNDLCCGQPFASKGYAEQGERKRQ
EMLDALLKASRGGLDPIYCDTSPCTLRLVQGLTDQRLDLYDPVRFIRTYLLDKLDFVPQE
KAIAVHVTCSTQHLGEAQALIDIARRCAKEVVVPEGIHCCGFAGDKGFTTPELNCHALRS
LKDAVQICDEGISTSRTCEIGLSRHGEIDYHGLVYLVDRVTRSKTATPTL