Protein Info for Psest_0949 in Pseudomonas stutzeri RCH2

Annotation: Site-specific recombinase XerD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 830 transmembrane" amino acids 310 to 330 (21 residues), see Phobius details PF00589: Phage_integrase" amino acids 609 to 766 (158 residues), 41 bits, see alignment E=9.3e-15

Best Hits

Predicted SEED Role

"Integrase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GIC8 at UniProt or InterPro

Protein Sequence (830 amino acids)

>Psest_0949 Site-specific recombinase XerD (Pseudomonas stutzeri RCH2)
MALDYSQSVCESKRYAIMSKRQSKTGVPHLVYQANTGFQYYLTFPKHFAANPKLPAQIRW
SLSHDEALARDLARYLNTAFEQFLAKATEHYVELFSDRLLADLQRFHLAVAEALKFADRV
WKVRPSPMKLANQDLSVAHARMMKDSAERVVLYSHEPGCEIFFALTPTPALVKALGVGFV
RFDWPLGTCDHNVASDAARYIYAALDVLETVPPSPGRYSKESPAFTAMTLYEYLCHARPD
QGRNLMHIPPALPQSRQALHFHLQQANAMHLKLRIIDRALLVQEESGLYVMLIELDPLCM
KAHLREKKSFRVELLTSSIIIAVLMLTYTLQKVDKVLLRYFQEDDHQDPYAQAMQEIGDL
VRRMLGSAATTEPMQTIPELNSPTDAAAPPQDPGTLALLNALGSVLPDAQKAKLETLFTQ
PSVNERIVSPACGPNAGLSLAALVKEYEERQIREGAWANPRTRITARARLEGLCELLGGH
RQVETLTRAEFNTLRDHLRSYPKNRHRLRATRNQPLSKIISDGKFEPINPRTAKKFFELA
RALVTYAHDQGHITENIAAGLAFSTKGAEAPRKRTYSPSQIEKLLHGPAYTLTQPPRWRL
DDYKFWLPLLGLYTGARLSELCQLRLEDIRQELGAWIISINRTGSKQLKTSDSERLVPIH
KQLIETGFLDYHQARLDIVKQDMKAPLFENIRVYGDLSPGHVASRWYLGSSQSSHGYLGL
CGLGEEGLTYHGLRHTFINQFRRQNLDLAKAKALVGHADKSTTGGYGDCYPSDVLKDEID
KIDFGLGLDHIHYRHYQELKKAQGDFKVGRPVGTPFPNVRAPKRHWKSYA