Protein Info for HP15_899 in Marinobacter adhaerens HP15

Annotation: protein YeeN

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 241 PF20772: TACO1_YebC_N" amino acids 4 to 74 (71 residues), 86.3 bits, see alignment E=1.6e-28 PF01709: Transcrip_reg" amino acids 79 to 236 (158 residues), 164.4 bits, see alignment E=1.8e-52

Best Hits

Swiss-Prot: 90% identical to Y2154_MARHV: Probable transcriptional regulatory protein Maqu_2154 (Maqu_2154) from Marinobacter hydrocarbonoclasticus (strain ATCC 700491 / DSM 11845 / VT8)

KEGG orthology group: None (inferred from 90% identity to maq:Maqu_2154)

Predicted SEED Role

"FIG000859: hypothetical protein" in subsystem RuvABC plus a hypothetical

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E4PEV8 at UniProt or InterPro

Protein Sequence (241 amino acids)

>HP15_899 protein YeeN (Marinobacter adhaerens HP15)
MGRAYQNRKESMAKTAAAKTKVYSKYGREIYMSAKSGSPDPQANLSLRGLIERAKKDQVP
SHVIEKAIDKAKGGAGEDYAAARYEGYGPGNCMVIVDCLTDNPNRTFGDVRLAFTKTKCK
IGTPGAVSHMFDHSAIFAFKGEDEEAVLEALMEADVDVTDIENEDGLITVFTPNTEYAKA
RQALVDAIEDIDFEVDEIQFLPKTTTMVEGDDIPMFEKFLDMLNELDDVQNVFHNAELPE
Q