Protein Info for Psest_0935 in Pseudomonas stutzeri RCH2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 992 PF13304: AAA_21" amino acids 855 to 928 (74 residues), 36.5 bits, see alignment 3e-13

Best Hits

KEGG orthology group: None (inferred from 67% identity to tsa:AciPR4_2379)

Predicted SEED Role

"ATPase involved in DNA repair"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GJN0 at UniProt or InterPro

Protein Sequence (992 amino acids)

>Psest_0935 hypothetical protein (Pseudomonas stutzeri RCH2)
MISRGSEWHRWEPHIHAPGTVLNNQFGSANPWGEYLSSLEKLTPQIEAIAVTDYYVTDTY
EEFLRHKAAGRLPGVKLIFPNIELRLDVAAKSGFVNIHLLVSPEDPEHLSEVKRLLKRLQ
FPAFNDNFDCTREELIKLGKRADQSIIDDEAALRHGATQFKVNFNLLRKVFHESEWAKKN
ILIAVAGGSGDGTSGLRQAADATVRQEIEKFAHIIFSSSLSQREFWLGLRPGMTAADLRS
RYDGCKPCLHGSDSHNQQSVGQPVDNRFSWIKGGLEFDSLRQACIDPEGRAYVGEVPPRT
AMPSQVISHVRIDDADWLTTPDIPLNPGLVAIIGARGSGKTALADIIAAGCEAISPFGWS
ADEAISPSFLARARQLLGDASTTLSWGGGAEITRSLDGRDANGHLSFPRARYLSQQFVEE
LCSAKGVSDGLVEEIERVIFDSHSPDDRDGAIDFAELRDQLTARFQQAREREAGALEDIS
SRIATELEKEGLVAALTTQVAQKKKLIADYNADLAKLVVKGTEAHVNRHTELSQVAQSLR
SKIQSFGNQRRTYEALQDEVRSMRATRAPEMLRQARERHSNSGLSDQQWDDFLLVYKGDV
DEGLASYIKWADGEVRKLNGIAPPLGDPNVPLIDGATDLSKLPLAPIAAEMTRLEALFSA
DKIVRDQYTTLAARIAQENTALQVLESRLADAVGAEARRKALQAERNDTYGRVFDAIINE
QNALASLYEPLMARLAASSGTLKKLSFSVRRIADVESWGTIAEEELLDRRKAGPFYGRGS
LIKAAIQELKAAWETGSAPEVQEAMTSFMEKYSKDLLTHAPYVQSQQTEFRAWSKQFAHW
LFGTDHLTVRYEISYDGVDIRKLSPGTRGIVLLLLYLALDDADDRPLIIDQPEENLDPKS
VFDELVSLFIAAKAKRQVIMVTHNANLVINTDADQIIVAASGPNVDGGLPPITYISGGLE
NEEIRQSVCEILEGGTTAFQERARRLRVRLDR