Protein Info for PGA1_c00090 in Phaeobacter inhibens DSM 17395

Annotation: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 359 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF00497: SBP_bac_3" amino acids 195 to 351 (157 residues), 47.2 bits, see alignment E=1e-16

Best Hits

KEGG orthology group: None (inferred from 62% identity to sit:TM1040_0340)

Predicted SEED Role

"LysM domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7EI37 at UniProt or InterPro

Protein Sequence (359 amino acids)

>PGA1_c00090 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain (Phaeobacter inhibens DSM 17395)
MRKHLIAALCCVTGLLATPLAAETCGGTYKVRPGDSLSLIADRLYKDVGMWSAIHSRNID
AIGPRPDAIRVGMELTMACLNGLPTGLPGGKAVADAQPVVAAPVKVQPGTAAVRSKINLL
TGDDYAPFTSKTAHNGGLITEVVNAAMTDAAPAQGFAIHWVDDWASHFDPLLSNALLDLG
FPWYRPDCDTMPESYRCVNFLFSDPMFETLMLLFVDKSRPFTFESDADIEGKTLCRPAGY
LTFDLDGYGRRWMEEKKITLKQPHKVADCFEMVAKGEADAVAINEFTGRSVMKENDLLDQ
FEVLPLPLSVLGIHVVVHKTHPQADEMLAMINTGLRNIRENGRYQAIIEDHMARIWAGF