Protein Info for Psest_0919 in Pseudomonas stutzeri RCH2

Annotation: Permeases of the drug/metabolite transporter (DMT) superfamily

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 318 transmembrane" amino acids 28 to 45 (18 residues), see Phobius details amino acids 57 to 78 (22 residues), see Phobius details amino acids 88 to 109 (22 residues), see Phobius details amino acids 118 to 137 (20 residues), see Phobius details amino acids 146 to 165 (20 residues), see Phobius details amino acids 175 to 193 (19 residues), see Phobius details amino acids 205 to 224 (20 residues), see Phobius details amino acids 236 to 257 (22 residues), see Phobius details amino acids 267 to 286 (20 residues), see Phobius details amino acids 292 to 310 (19 residues), see Phobius details PF00892: EamA" amino acids 27 to 160 (134 residues), 75.1 bits, see alignment E=3.5e-25 amino acids 175 to 309 (135 residues), 43.5 bits, see alignment E=2e-15

Best Hits

KEGG orthology group: None (inferred from 60% identity to bcj:BCAS0701)

Predicted SEED Role

"Permease of the drug/metabolite transporter (DMT) superfamily" in subsystem Queuosine-Archaeosine Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GHP7 at UniProt or InterPro

Protein Sequence (318 amino acids)

>Psest_0919 Permeases of the drug/metabolite transporter (DMT) superfamily (Pseudomonas stutzeri RCH2)
MTCPHSLTTEARNTPVSSRTLLTPRLKGMVLLLLAILVWGANWPVMKAGLGHVTPVWFSA
SRFALGALCLFLLQLLTGTLYRPSRGDVPLLLSVGLLQMLAFTLLGALAMTDIPAGRSAV
LAYTTPLWVTPLAVLVFRERLVPRQLLGAALGMFGVAVLFNPLTLDWNNASLVRANLMLL
IASACWALCILHLRYAKVRATAYQLAPWQMLVATVPLLALARIVEGPFTGDGSVAFWQII
LFVGPLATAFCFCAVNAASMWLPATSMSLAMLGVPLVGLMSSVFWLGETLSASLIAGVLA
ISAGVLLAIVKTRAKATS