Protein Info for HP15_848 in Marinobacter adhaerens HP15

Annotation: protein containing DUF980

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 276 transmembrane" amino acids 6 to 25 (20 residues), see Phobius details PF06167: Peptidase_M90" amino acids 26 to 266 (241 residues), 292.8 bits, see alignment E=1.1e-91

Best Hits

Swiss-Prot: 41% identical to Y2042_SYNY3: Uncharacterized protein slr2042 (slr2042) from Synechocystis sp. (strain PCC 6803 / Kazusa)

KEGG orthology group: K09933, hypothetical protein (inferred from 69% identity to maq:Maqu_2172)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E4PR77 at UniProt or InterPro

Protein Sequence (276 amino acids)

>HP15_848 protein containing DUF980 (Marinobacter adhaerens HP15)
MSAALVFAVFAVTLIAATVFYLFFYRAWRRERELRAPFPTSWREHLDANVPLYRRFPEAL
KQTLEQRVQLFLSEKEFYGCDGFEVDDAVRVTIAGHACLLILARPYSDFDEVSSILVYPD
AYHVRDIESDGMIVSESNEIRAGEASSRGQVVLAWRECQEASRNPHSGHNVMLHEFAHQL
DYLDGTADGAPPLSGEQARHWQSSMTTAYEDLRHSLRHHHRSWLDPYGATEPAEFFAVLT
EAFFQQPRHLKREQPEVYKALQGYYRLDPTAFWEDA