Protein Info for Psest_0809 in Pseudomonas stutzeri RCH2

Annotation: Cytochrome c, mono- and diheme variants

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 503 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details PF13442: Cytochrome_CBB3" amino acids 31 to 102 (72 residues), 48.1 bits, see alignment E=2.4e-16 PF00034: Cytochrom_C" amino acids 32 to 102 (71 residues), 26.7 bits, see alignment E=2.4e-09 PF02239: Cytochrom_D1" amino acids 140 to 494 (355 residues), 513.5 bits, see alignment E=4.6e-158

Best Hits

KEGG orthology group: None (inferred from 95% identity to psa:PST_3538)

Predicted SEED Role

"Nitrite reductase associated c-type cytochorome NirN" in subsystem Dissimilatory nitrite reductase

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GHY9 at UniProt or InterPro

Protein Sequence (503 amino acids)

>Psest_0809 Cytochrome c, mono- and diheme variants (Pseudomonas stutzeri RCH2)
MQLMPALLLAAALPAATFVALDMATAASLPADSQALYEQHCQSCHGINRLGGAGPALLPE
SLSRIKPTEAHAVIRDGRPASQMAAYSHMLNEAQITALVDYLYQPSAVPPTWSDADIRAS
HRILKDVTSLPSTPQHGAAPRNLFVVVEAGNHHVRVLDGDRFEELANFQSHFALHGGPKF
SPDGRFVYFASRDGWVSVYDLHNLTMLAEVRAGLNTRNLAVSNDGRWVLVGNYLPGNLVL
LDARDLSLIKHIPAVGQDGTPSRVSAVYTAPPRDSFVVALKDVQEAWELSYAGEPTFEPR
RIKAADYLDDFSFTPDYRYLLATSRKAHGGQVIDLDSGKAVTDIPLPGMPHLGSGIYWKR
DGKWVFATPNVSKGLISVLDLETWKLIKEIPTEGPGFFMRSQANSPYAWTDVFFGPNNDA
VHLIDKQTLEVAHTLRPMPGKNAAHVEFTNDGRYALLSVWDTDGALIVYDANTLEEVKRI
PMNKPSGKYNVGNKIEFAEGTSH