Protein Info for Psest_0077 in Pseudomonas stutzeri RCH2

Annotation: luciferase family oxidoreductase, group 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 332 PF00296: Bac_luciferase" amino acids 8 to 305 (298 residues), 159.3 bits, see alignment E=7.6e-51 TIGR03558: luciferase family oxidoreductase, group 1" amino acids 9 to 329 (321 residues), 422.8 bits, see alignment E=4.7e-131

Best Hits

Swiss-Prot: 53% identical to YVBT_BACSU: Uncharacterized protein YvbT (yvbT) from Bacillus subtilis (strain 168)

KEGG orthology group: None (inferred from 97% identity to psa:PST_4133)

Predicted SEED Role

"Bacterial luciferase family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GGY5 at UniProt or InterPro

Protein Sequence (332 amino acids)

>Psest_0077 luciferase family oxidoreductase, group 1 (Pseudomonas stutzeri RCH2)
MSRIAQTRFSALDLAPIRDDGTPAQALHNALALARHVEGLGFERFWVAEHHNMDGIASAA
TAVLLGYLAAHTTRIRLGAGGVMLPNHAPLVIAEQFGTLEALYPGRIDLGLGRAPGADQF
TAHALRRDRMGSADDFPQDVEELELLLGPRQPNQRVIAMPGVNSNVPIWLLGSSLFSAQL
AAAKGLPYAFASHFAPRYMHQAIKLYRDNFKPSAVLDKPYVMLGVPLIAADSDERAEHLV
TSVYQRILSLIRGQSLVLRPPVQSMQGLWLPHEQQAVGDFLGLALIGGPQKVRARLDVLL
EQTQADELIFTCDLYETTDRHRAFEIVAALRQ