Protein Info for Psest_0762 in Pseudomonas stutzeri RCH2

Annotation: Glucose/sorbosone dehydrogenases

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 432 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF23500: DUF7133" amino acids 117 to 358 (242 residues), 41.2 bits, see alignment E=2e-14 PF07995: GSDH" amino acids 191 to 357 (167 residues), 38.8 bits, see alignment E=1.1e-13

Best Hits

KEGG orthology group: None (inferred from 91% identity to psa:PST_3587)

Predicted SEED Role

"L-sorbosone dehydrogenase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GIX1 at UniProt or InterPro

Protein Sequence (432 amino acids)

>Psest_0762 Glucose/sorbosone dehydrogenases (Pseudomonas stutzeri RCH2)
MKHSSSSALTALAMAVLLSACGGEQDASQHYGTNPKLPEPERGLLPSMKIAEPTPWGDQV
PTVPDGFSVTAIATDLKIPRQTLVLPNGDILVAEGRGGNAAKLKPKDVIAGYLKAKGNTS
VESGNRLTLLRDADGDGTYELQTVFAEDLNAPYGLAFHDGNLYVANQDELVRFDYQDGQT
EASGPPSKVADLPSEINHHWTKALTISPDGQYLYVGIGSNSNITERGMEAEVDRAMVWQV
NAETGAYKPYATGLRNPTAMAIQPESGQLWTVVNERDELGEDLVPDYLTSVKEGGFYGWP
YAYWGQNVDDRVRPQDKDKVAASITPDYALGSHVAALGLDFSSDVMGEQFAEGVFIGEHG
SWNRKDPVGYKVIFVPFRDGRPAGEPIDFATGFRTDDGKTRGRPVGVTVDPRGALIVADD
LANVVWRVTRKQ