Protein Info for Psest_0761 in Pseudomonas stutzeri RCH2

Annotation: Predicted permease, DMT superfamily

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 374 transmembrane" amino acids 87 to 109 (23 residues), see Phobius details amino acids 115 to 135 (21 residues), see Phobius details amino acids 147 to 167 (21 residues), see Phobius details amino acids 173 to 193 (21 residues), see Phobius details amino acids 205 to 224 (20 residues), see Phobius details amino acids 230 to 251 (22 residues), see Phobius details amino acids 262 to 279 (18 residues), see Phobius details amino acids 293 to 314 (22 residues), see Phobius details amino acids 321 to 341 (21 residues), see Phobius details amino acids 347 to 366 (20 residues), see Phobius details PF00892: EamA" amino acids 86 to 219 (134 residues), 60.3 bits, see alignment E=1.2e-20 amino acids 236 to 362 (127 residues), 48.1 bits, see alignment E=7.5e-17

Best Hits

Predicted SEED Role

"Permease of the drug/metabolite transporter (DMT) superfamily" in subsystem Queuosine-Archaeosine Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GJ55 at UniProt or InterPro

Protein Sequence (374 amino acids)

>Psest_0761 Predicted permease, DMT superfamily (Pseudomonas stutzeri RCH2)
MSEPVSKGYRRLIRSFPPSRQPCALTRLRNHSCTPSELGCSGLPRGYGNAHPPQLQISSI
EPKAWDLLDGAPPNGERSVGTTGSHGALFVALAALCWGLSGGIGGILAAEGWSPIVVSFY
RGAIGLLFVGVWLALRPDSSGLASRRLWFWSAVAGVGVAGNFSFYFLSIAEGSVAVAATL
MYSAPVFVYLVSFACRLERPTPFKWVAIAMVMLGVILLTGIYDIGAGDITAIAAGAGLLS
GVSYAVFIFAFKYAAPHGSPQAILVIAFAVLVGILGWMGDAEQAVAVLHAPNWPLFVMLG
VLGAGLSFIFYIIGLNQTAPAVASIVAMVEPVTASLFGVVVLNESLAALQMLGMALILLT
VTALGVHSKDGNQT