Protein Info for PGA1_c07470 in Phaeobacter inhibens DSM 17395

Annotation: putative oligoendopeptidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 614 TIGR02290: oligoendopeptidase, pepF/M3 family" amino acids 33 to 612 (580 residues), 610.1 bits, see alignment E=2.9e-187 PF08439: Peptidase_M3_N" amino acids 136 to 204 (69 residues), 60.2 bits, see alignment E=1.8e-20 PF01432: Peptidase_M3" amino acids 221 to 599 (379 residues), 135.7 bits, see alignment E=3.1e-43

Best Hits

KEGG orthology group: K08602, oligoendopeptidase F [EC: 3.4.24.-] (inferred from 87% identity to sit:TM1040_0569)

Predicted SEED Role

"Oligoendopeptidase F (EC 3.4.24.-)" (EC 3.4.24.-)

Isozymes

Compare fitness of predicted isozymes for: 3.4.24.-

Use Curated BLAST to search for 3.4.24.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7DMX9 at UniProt or InterPro

Protein Sequence (614 amino acids)

>PGA1_c07470 putative oligoendopeptidase (Phaeobacter inhibens DSM 17395)
MINAPFLDRDLMRDVNANAAGGAGPDGLGNLPEWDLSDLYTSENASELERDLAWLDGECA
SFAADYEGKLADLDADGLLTCVLRNEKINAIAGRIMSFAGLRYYQLTTDAGRAKFMSDMQ
EKITIFTTPLVFFTLEINRLEDAVLESHFAANSDLARYKPIFDRIRAMKPYQLSDELEKF
LHDLGVVGDAWERLFDETIAGLTFTVDGEELNIEGTLNLLTEQDRSKREAAARELARVFS
DNIKIFARVHNTQAKEKEILDRWRGMPSPQMGRHLSNHVEPEVVEALREAVVSAYPKLSH
RYYELKRKWLGLDRMQVWDRNAPLPMETSRTVNWDEARKMVMDAYSAFDPRMGDLAEPFF
DKGWIDAAVKPGKAPGAFAHPTVTDVHPYVMLNYLGKPRDVMTLAHELGHGVHQVLAADQ
GEMLSSTPLTLAETASVFGEMLTFRKMLENAKDKTERKILLAGKVEDMINTVVRQIAFYD
FECKLHAARAEGELTPDDINALWMSVQAESLGEAFDFMDGYETFWTYVPHFVHSPFYVYA
YAFGDGLVNALYSVYAEGAEGFEDKYFEMLKAGGSKHHKELLAPFGLDASDPTFWDKGLS
MISDMIDELEAMED