Protein Info for Psest_0720 in Pseudomonas stutzeri RCH2

Annotation: Predicted hydrolase of the alpha/beta superfamily

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 208 transmembrane" amino acids 102 to 123 (22 residues), see Phobius details PF00561: Abhydrolase_1" amino acids 49 to 138 (90 residues), 37.4 bits, see alignment E=5.8e-13 PF12697: Abhydrolase_6" amino acids 52 to 138 (87 residues), 26.9 bits, see alignment E=1.9e-09 PF02129: Peptidase_S15" amino acids 56 to 122 (67 residues), 29.6 bits, see alignment E=1.4e-10 PF12146: Hydrolase_4" amino acids 57 to 141 (85 residues), 39.5 bits, see alignment E=1e-13 PF00975: Thioesterase" amino acids 88 to 137 (50 residues), 41.1 bits, see alignment E=6.1e-14

Best Hits

KEGG orthology group: K07018, (no description) (inferred from 90% identity to psa:PST_3631)

Predicted SEED Role

"Alpha/beta hydrolase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GEZ2 at UniProt or InterPro

Protein Sequence (208 amino acids)

>Psest_0720 Predicted hydrolase of the alpha/beta superfamily (Pseudomonas stutzeri RCH2)
MLKRETPLSLDGPCGTLEALYFDQPQPTGLALICHPNPVKGGTMLNKVVSTLQRTARDAG
YCTLRFNYRGVGASAGAHDMVEGEVDDAEAALRWLRQQQPELPLTLLGFSFGGFVAGSLA
ARLEAEGQSVQRLLIVAPAVSRLNSLSLAGDCQLTIIQPEQDEVIDAESVYAFSAALQHP
HELLKVAECGHFFHGKLVELKELVAPRL