Protein Info for Psest_0704 in Pseudomonas stutzeri RCH2

Annotation: Uncharacterized protein conserved in bacteria

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 352 transmembrane" amino acids 29 to 51 (23 residues), see Phobius details PF10095: DUF2333" amino acids 30 to 352 (323 residues), 522.4 bits, see alignment E=2.1e-161

Best Hits

KEGG orthology group: None (inferred from 95% identity to psa:PST_3647)

Predicted SEED Role

"FIG014328: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GIR1 at UniProt or InterPro

Protein Sequence (352 amino acids)

>Psest_0704 Uncharacterized protein conserved in bacteria (Pseudomonas stutzeri RCH2)
MLDWKNRFARLGRSNGSAGTAGHRSGSPLLLILAGLLGVYLLVTLILGWYWSREPDMFPV
QQHTRQAAEASQRQLVSGYTTVETLKRVASTLLDKPGGYLSNDIAPPGLWLDNMPSWEYG
VLVQVRDLSRALRKDFARSQSQSTEDPDLAKAEPLFNFDNRSWALPASESEYRNAIRGLD
RYLARLSDPEPKALFYTRADNLNNWLGDTATRLGSLSQRLSASVGRVRLDTDIAPEQERA
GIVPQVKEQVVETPWLQIDNVFFEARGQAWALSHLLRAIEVDFADVLAKKNATISVRQII
RELEAAQEPLWSPMVLNGSGYGVLANHSLVMANYISRANAAIIDLRNLLSQG