Protein Info for Psest_0696 in Pseudomonas stutzeri RCH2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 297 transmembrane" amino acids 15 to 41 (27 residues), see Phobius details amino acids 48 to 65 (18 residues), see Phobius details amino acids 71 to 88 (18 residues), see Phobius details amino acids 95 to 118 (24 residues), see Phobius details amino acids 149 to 172 (24 residues), see Phobius details amino acids 192 to 211 (20 residues), see Phobius details amino acids 217 to 239 (23 residues), see Phobius details amino acids 248 to 274 (27 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 97% identity to psa:PST_3654)

Predicted SEED Role

"FIG003573: hypothetical protein" in subsystem CBSS-262719.3.peg.410

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GHN5 at UniProt or InterPro

Protein Sequence (297 amino acids)

>Psest_0696 hypothetical protein (Pseudomonas stutzeri RCH2)
MRALAEFIMRGRMQAIFVVAGAAALPMLFWLSAAAGCLVLLRRGLNDALGVLVWAVLPAL
AWWYFGDPRTLLVLLGSLGLALLLRSHASWVRVMLCSVGLGLLYVWALGAVFGEPIAALA
SELQKVLPDALSGAYQQLSVEERGRLESLLAPVLTGLLAALLQIVTLLSLMLGRYWQAAL
YNPGGFGSEFRALRFPPLLAMSLLVGMLLGPNLGVQLAVLTPLCSVPLVFAGIALMHGLV
AQGRLPRFWLVGLYVTLVLFMQLIYPLLAVLAIVDSLFDFRGRAAGKNGAGPANGEG