Protein Info for Psest_0670 in Pseudomonas stutzeri RCH2

Annotation: ethanolamine permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 482 transmembrane" amino acids 34 to 55 (22 residues), see Phobius details amino acids 65 to 87 (23 residues), see Phobius details amino acids 110 to 135 (26 residues), see Phobius details amino acids 142 to 164 (23 residues), see Phobius details amino acids 171 to 194 (24 residues), see Phobius details amino acids 215 to 235 (21 residues), see Phobius details amino acids 255 to 275 (21 residues), see Phobius details amino acids 306 to 327 (22 residues), see Phobius details amino acids 352 to 369 (18 residues), see Phobius details amino acids 375 to 398 (24 residues), see Phobius details amino acids 413 to 433 (21 residues), see Phobius details amino acids 439 to 457 (19 residues), see Phobius details TIGR00908: ethanolamine permease" amino acids 27 to 470 (444 residues), 653.7 bits, see alignment E=7.2e-201 PF00324: AA_permease" amino acids 51 to 456 (406 residues), 107.5 bits, see alignment E=7.4e-35 PF13520: AA_permease_2" amino acids 64 to 451 (388 residues), 140.2 bits, see alignment E=9.5e-45

Best Hits

KEGG orthology group: None (inferred from 98% identity to psa:PST_3680)

Predicted SEED Role

"Ethanolamine permease" in subsystem Ethanolamine utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GEU8 at UniProt or InterPro

Protein Sequence (482 amino acids)

>Psest_0670 ethanolamine permease (Pseudomonas stutzeri RCH2)
MALEHSRSTPPHHAIDFETVGSSYFQERELKKGAAGWVLLVGLGVAYVISGDYAGWNFGL
AQGGWGGLFIATLLMATMYLCMCFSLAELSSMVPTAGGGYGFARTAFGPLGGFLTGTAIL
IEYAIAPAAIAVFIGAYCESLFGIGGWMIYLAFYIIFIGIHIFGVGEALKLMFIITAVAA
LALAVFIVAMVPHFSVDKLLDIAPTTAAGASNFLPYGYVGIWAAIPYAIWFFLAVEGVPL
AAEETKNPQRDMPRGLIGAMLILVAFAGLILLVGPGGAGSSTLVASGNPLVEALTTAYGS
STWMSGFVNLVGLAGLIASFFSIIYAYSRQIFALSRAGYLPRKLSLTNRNKAPVLALVIP
GVIGFLLSLTGQGDLLILVAVFGATISYVLMMASHIVLRLRRPDLHRPYKTPGGIVTSGI
ALVLACIAVIAGFLVDPRVVIGAAIIYGIFIAYFAIYSRHHLVAGTPEEEFAAIEKAEAS
LH