Protein Info for PGA1_c06700 in Phaeobacter inhibens DSM 17395

Annotation: Integral membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 161 transmembrane" amino acids 28 to 46 (19 residues), see Phobius details amino acids 51 to 71 (21 residues), see Phobius details PF10003: DUF2244" amino acids 18 to 157 (140 residues), 136 bits, see alignment E=3.8e-44

Best Hits

KEGG orthology group: None (inferred from 62% identity to sit:TM1040_2292)

Predicted SEED Role

"Integral membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7EX24 at UniProt or InterPro

Protein Sequence (161 amino acids)

>PGA1_c06700 Integral membrane protein (Phaeobacter inhibens DSM 17395)
MPYQWTTARTDSHQELHLWPHQSLPPEGYVRFLGTLAALITIPMIPLLGSAALWGVLPFV
TATLFAVKWALDRSRRDRHVLEVLTLDPSEAHLERINPTGKRQNWSCNRYWTEVELHTDD
GPVPNYVTLRGSGREVEIGAFLSEDERKALYDELQAAFRKA