Protein Info for Psest_0668 in Pseudomonas stutzeri RCH2

Annotation: Ethanolamine ammonia-lyase, small subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 264 PF05985: EutC" amino acids 10 to 244 (235 residues), 326.1 bits, see alignment E=5.7e-102

Best Hits

Swiss-Prot: 72% identical to EUTC_PSEAB: Ethanolamine ammonia-lyase light chain (eutC) from Pseudomonas aeruginosa (strain UCBPP-PA14)

KEGG orthology group: K03736, ethanolamine ammonia-lyase small subunit [EC: 4.3.1.7] (inferred from 91% identity to psa:PST_3682)

Predicted SEED Role

"Ethanolamine ammonia-lyase light chain (EC 4.3.1.7)" in subsystem Ethanolamine utilization (EC 4.3.1.7)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 4.3.1.7

Use Curated BLAST to search for 4.3.1.7

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GGX1 at UniProt or InterPro

Protein Sequence (264 amino acids)

>Psest_0668 Ethanolamine ammonia-lyase, small subunit (Pseudomonas stutzeri RCH2)
MPDRSPTTENPWQHLRQLTPARIALGRAGVSLPTDAQLDFQFAHAQARDAVHLPLDCAAL
AGELEKHKLGCLHLRSAASDRQIYLQRPDLGRRLDEASAATLDEHAGEGCDLALVIADGL
SALAVQRHAAPMALKIAEHCQAEGWSLGPIILVEQGRVAIADEIGQRLKARMVVILLGER
PGLSSPDSLGLYFTWAPEVGRHDAQRNCISNIRPEGLSYNLAAHRLLYLMREASRRQLSG
VQLKDEAEVAALEGEPRAGNFLLG