Protein Info for PGA1_c00670 in Phaeobacter inhibens DSM 17395

Annotation: putative integral membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 302 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details transmembrane" amino acids 35 to 56 (22 residues), see Phobius details amino acids 68 to 88 (21 residues), see Phobius details amino acids 94 to 115 (22 residues), see Phobius details amino acids 121 to 139 (19 residues), see Phobius details amino acids 151 to 169 (19 residues), see Phobius details amino acids 181 to 202 (22 residues), see Phobius details amino acids 214 to 235 (22 residues), see Phobius details amino acids 247 to 265 (19 residues), see Phobius details amino acids 271 to 289 (19 residues), see Phobius details PF00892: EamA" amino acids 7 to 138 (132 residues), 47.9 bits, see alignment E=8.4e-17 amino acids 154 to 289 (136 residues), 42.7 bits, see alignment E=3.5e-15

Best Hits

KEGG orthology group: None (inferred from 72% identity to sil:SPO3239)

Predicted SEED Role

"Integral membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7EI89 at UniProt or InterPro

Protein Sequence (302 amino acids)

>PGA1_c00670 putative integral membrane protein (Phaeobacter inhibens DSM 17395)
MTPSYHGHLAMLVFSALVAGSFSLGAMVANDIAPMALNAIRFVIAAVVIGIAAQLTHGLR
RIDFVAPWRFLVLGGLFAIYFVLMFYGLQTAAPVSAAAVFTLTPVLSGVFGWILLRQVTT
WRMALALAIGAMGAIWVIFRGDPTAIWAFEIGRGEMIYLWGCVAHAAYTPMVRLLNRGEP
AVVFTFGMLVAGAMILLVVGWGDIRATDWTELSPLVWVVLFYVALIASAATFVLLQYATL
HLPSAKVMAYTYLTPSWVILWEIALGRPAPSGIVALGVVCTIWALWLLLREGRSIVPETQ
SG