Protein Info for Psest_0661 in Pseudomonas stutzeri RCH2

Annotation: PAS domain S-box

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 679 transmembrane" amino acids 26 to 49 (24 residues), see Phobius details amino acids 55 to 74 (20 residues), see Phobius details TIGR00229: PAS domain S-box protein" amino acids 92 to 211 (120 residues), 33.2 bits, see alignment E=2.6e-12 amino acids 337 to 458 (122 residues), 23.4 bits, see alignment E=2.8e-09 PF08447: PAS_3" amino acids 239 to 310 (72 residues), 39.9 bits, see alignment E=1.5e-13 PF00989: PAS" amino acids 339 to 447 (109 residues), 33.7 bits, see alignment E=1.1e-11 PF08448: PAS_4" amino acids 345 to 452 (108 residues), 23.4 bits, see alignment E=2.1e-08 PF13426: PAS_9" amino acids 348 to 450 (103 residues), 23.2 bits, see alignment E=2.3e-08 PF07730: HisKA_3" amino acids 479 to 544 (66 residues), 39.5 bits, see alignment E=2.3e-13 PF02518: HATPase_c" amino acids 586 to 677 (92 residues), 43.7 bits, see alignment E=1.2e-14

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GIW8 at UniProt or InterPro

Protein Sequence (679 amino acids)

>Psest_0661 PAS domain S-box (Pseudomonas stutzeri RCH2)
MIPNAADVAANLYASRRALRVAPWKIVLAYALVAVVWIFTTNLIITALGLPESSYTLRIA
AFVLFTALGIWWYTRRLADGVIRSQKLVGRAENSYRMLFDRHPAPMWLFDKRTLSIVRGN
RQAVAAYGYSAGEFAELEILDLYAAHERERLEALAQPVTPQQLAGLRQHVARDGRELNVE
VLCSALDIDESPFALLMAQEVSAHFQTETQLASALRKLELARHLAQMAYWQRLPGSEQVD
WSPEIGDVLGIANAGALSWTAFLDYLHPDDRPAVAAAHERAERHGSLAHEFRVLGANGEQ
RWMFERIQLLGRQRALFGALMDVTELKAGEGDLAGEKRRYERMVDGLPDGVLMLRQGRIH
YANAAARRLLAGDPLQPLDAQPFIEFVAEHQRARETARLAALQRGAAAGQPQRLLLVCRD
GQPFEAEVSETLLPADGDAEVQLLIRDVSQAEQLRRDLEDANQRLQHLSQRLIEVQEIER
REVARDLHDDVGQHLTGLKLHLQRLIRRQAGDSEFERLSQPLVASMDAALAKVRSLSLSL
HPLQLETLGLEAAVRWHLQHFLEASGTCWELEVRGSTTEIPPGRAVAAFRLVQEAVNNVA
RHARARTVRILMVCDEHELRLEILDDGRGFDVPEALQGAQSLGLTSMHERVASFGGDLRI
SSLPGMGTRITALLPAPND