Protein Info for PGA1_c06340 in Phaeobacter inhibens DSM 17395

Annotation: putative FAD linked oxidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 474 PF01565: FAD_binding_4" amino acids 44 to 181 (138 residues), 108.8 bits, see alignment E=1.8e-35 PF02913: FAD-oxidase_C" amino acids 221 to 468 (248 residues), 157.4 bits, see alignment E=5.6e-50

Best Hits

KEGG orthology group: None (inferred from 74% identity to sit:TM1040_2327)

Predicted SEED Role

"D-2-hydroxyglutarate dehydrogenase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7DY51 at UniProt or InterPro

Protein Sequence (474 amino acids)

>PGA1_c06340 putative FAD linked oxidase (Phaeobacter inhibens DSM 17395)
MTLNPADTSFVDHLRAVLPADTLRPAEPRYLEEPRGRYQGQAGVIALPRSTEEVATLLRA
AHTARVPVVPYGGGTGLVGGQIMGAAGPAPLVISLERMTALRGVYPQENVIAVEAGMILA
EVQRAATEAGRLFPLSLAAEGTARIGGTLATNAGGVNVLRYGNARDLCLGLEAVLPNGEI
WQGLSRLRKDNTGYDLRNLLIGAEGTLGIITAASLKLSPIPAEQGTAMLTVASPVAAIDL
LAMARDQLGETISAFELIHRQGLEFLRETLPDLRLPFADLPDWCVLIDLGLPKGRSPADA
LAALFETALDAGLCADGVIAQSEAQRQALWSAREHIPEGNRRIGSVSSHDISIPISRIPD
FIFEGGKRLAALGDMRINCFGHLGDGNLHYNVFPAQGKDRRAYEHLRDDVKRCVHDLTHE
YDGSVSAEHGIGRLKVADLRRYGDPVKLAAMQAIKQALDPHGIMNPGAVVPLAD