Protein Info for PGA1_c00640 in Phaeobacter inhibens DSM 17395

Annotation: putative elongation factor G

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 664 PF00009: GTP_EFTU" amino acids 25 to 249 (225 residues), 31.5 bits, see alignment E=2e-11 PF03764: EFG_IV" amino acids 455 to 568 (114 residues), 126.8 bits, see alignment E=6e-41 PF00679: EFG_C" amino acids 573 to 654 (82 residues), 43.3 bits, see alignment E=4.5e-15

Best Hits

Predicted SEED Role

"Translation elongation factor G-related protein" in subsystem Translation elongation factor G family

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7EVJ6 at UniProt or InterPro

Protein Sequence (664 amino acids)

>PGA1_c00640 putative elongation factor G (Phaeobacter inhibens DSM 17395)
MRVFTVIGPSHSGKTELAKALATLQEPEQKPQQATGVAELRAFQFMDESWGVIDIAGGVE
NLVTAGPALAASDAAVVCVSADPAAGVLAAPYLRMVEEAGIPAFLFINRMDQAAGRVADI
VAALQTYCRHNIVLRQIPMRAGGEVIGAVDLISERAWKYQEGQPSALVAFPDSIHARERQ
ARGEMLEALADYDDDLLEQLIEDRKPLTEAVYDVATRVLQHNDLIPALLGSALHRNGILR
LMKSLRHEAPAVEVAALRLAADGQPLAVGCIGDLVKHLGKTVVVRALSQSVGAGAQVGGG
NLGAMTQLRGEGTAAKTSASAPATGRAAGNGRNPSPSGSGDLAPGDIAQVVKSDHLSLGY
AYLENRAAQLPQWAQPRPSSYQRIVTPVHDRDDVRLTAALERIAEIDTGMLVEQDEISGH
ALLHLQGPLHLRRILGLLNDSFGIEVGDEPVPPALRETITRPVTIHHRHRKQSGGAGQFA
DVVLSIAPATRGSGFHFTDEVKGGAVPRGYIPSVEAGAREALKAGASGHPVVDVQVTLKD
GKHHSVDSSDYAFRTAGKSAVREALAEAGSVVLQPIMRVEIHVPSVFTGGLVPVVSGMQG
QILGFAAHPEAAGWDVFETLLPVAVQDQLCSSLASATRGTAWFSSGFDHYEEARRTSSAA
GGGR