Protein Info for Psest_0633 in Pseudomonas stutzeri RCH2

Annotation: Phage integrase family.

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 698 transmembrane" amino acids 434 to 447 (14 residues), see Phobius details amino acids 577 to 590 (14 residues), see Phobius details

Best Hits

Predicted SEED Role

"Site-specific recombinase, phage integrase family domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GGU0 at UniProt or InterPro

Protein Sequence (698 amino acids)

>Psest_0633 Phage integrase family. (Pseudomonas stutzeri RCH2)
MNVELPAELDFLKAFYTDPRTEYKKSSWLLSDFDLHIWKYDFNFATPNTINWDITLDDET
SLLAQKNKPLLDGLKYFLTTSTRSVRGSAIELGSLAAQMTMFNRAIHVADYILLNAKEYQ
LSRFGLAGINSHHMKRMLDVFSSVNGSEESVYEWTKTISKFCLSLINTSSSIELDSILDQ
YPRMRIVTDEQLDEHHLEIPFDLIPYARAALHLHGYYKKRSTAGVRTPNTLQLAKSLYAN
TLKGGHLKLKTLSSLEFYTDNEREIISREYPGSSVRTGDHEAMTSGPFRAYRFLTYNLGI
LHEIGLPAPEVSELKQILDYEPSLSEAARFRTLPYPIVRDAFRKSIEYHFKYGELLIEGF
CRMAEHCNLNGIAPTQLTNGELQDIMPPELIDMGIRKLGLVCQTVSIRHGALRKQSNYFI
ELRNNVGLIECLRIYIGCVQMVVGTIMARRIGEMLDLHSTDCLDKSERWLIFLNRKSTSN
LFGIRQRQARPIEPIAVKMIKNLISMQQRLLKSGFITEMTSLFAPPGLLGNAGLSQQTMY
AYNRNLDLLCDYFELPLNSKGERYYIRQHQLRRFFSMVFFHSSSFGGLETLQWMLGHTDM
QHVWNYITESTDGAVLRSAKAQFIAESLHNGDITAYEDLAEILKIRYNTDNFALVDTAEL
EDAITDMIKTGKVQIEPEFFTDETGQHMRVVVKIQSTD