Protein Info for Psest_0595 in Pseudomonas stutzeri RCH2

Annotation: Uncharacterized conserved protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 118 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF11604: CusF_Ec" amino acids 48 to 117 (70 residues), 92.9 bits, see alignment E=4.3e-31

Best Hits

KEGG orthology group: K07810, Cu(I)/Ag(I) efflux system periplasmic protein CusF (inferred from 45% identity to ppu:PP_5388)

Predicted SEED Role

"Cobalt/zinc/cadmium efflux RND transporter, membrane fusion protein, CzcB family" in subsystem Cobalt-zinc-cadmium resistance

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GIQ8 at UniProt or InterPro

Protein Sequence (118 amino acids)

>Psest_0595 Uncharacterized conserved protein (Pseudomonas stutzeri RCH2)
MNIKHITLASLFLVPVAYAADKEPMDGMPMDHKGMNMPMDQKSAGQTATATGTVKKVNTE
SGTVTIAHGPVEALGWPSMTMGFKAKPDQLQTLKEGDQVEFEFSSKGMDSTITRIEKQ