Protein Info for PGA1_c06000 in Phaeobacter inhibens DSM 17395

Annotation: chorismate mutase-like protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 101 TIGR01803: chorismate mutase related enzymes" amino acids 13 to 94 (82 residues), 81.1 bits, see alignment E=2.7e-27 PF01817: CM_2" amino acids 17 to 94 (78 residues), 75.4 bits, see alignment E=1.9e-25

Best Hits

KEGG orthology group: None (inferred from 72% identity to sil:SPO3102)

Predicted SEED Role

"Isochorismate pyruvate-lyase (EC 4.-.-.-)" in subsystem Chorismate: Intermediate for synthesis of PAPA antibiotics, PABA, anthranilate, 3-hydroxyanthranilate and more. (EC 4.-.-.-)

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 4.-.-.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7EWW0 at UniProt or InterPro

Protein Sequence (101 amino acids)

>PGA1_c06000 chorismate mutase-like protein (Phaeobacter inhibens DSM 17395)
MTDRHPPQDCADMPALRQQIDRLDRDLIALLVERAGYIDRAIALKTANNWPARIPARVEE
VVANARTTASAAGLDPDLVESLWRQLVEWSIAREARVIREE