Protein Info for HP15_551 in Marinobacter adhaerens HP15

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 121 TIGR00252: TIGR00252 family protein" amino acids 4 to 117 (114 residues), 75.7 bits, see alignment E=1.5e-25 PF02021: UPF0102" amino acids 12 to 101 (90 residues), 79.2 bits, see alignment E=1.3e-26

Best Hits

Swiss-Prot: 67% identical to Y2464_MARHV: UPF0102 protein Maqu_2464 (Maqu_2464) from Marinobacter hydrocarbonoclasticus (strain ATCC 700491 / DSM 11845 / VT8)

KEGG orthology group: K07460, putative endonuclease (inferred from 67% identity to maq:Maqu_2464)

Predicted SEED Role

"Endonuclease (EC 3.1.-.-)" (EC 3.1.-.-)

Isozymes

Compare fitness of predicted isozymes for: 3.1.-.-

Use Curated BLAST to search for 3.1.-.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E4PNJ7 at UniProt or InterPro

Protein Sequence (121 amino acids)

>HP15_551 hypothetical protein (Marinobacter adhaerens HP15)
MDGTKTLGNHFEGVAARYLASRGVRIIERNVYNRGGEIDLVGQEGETLVFFEVRYRGAGS
LVDPASSINYPKQKRLIRAVSFYLHRHGLWNSLSRIDVVAISPGTVKKYRVQWIRNAILA
G