Protein Info for Psest_0573 in Pseudomonas stutzeri RCH2
Annotation: cation diffusion facilitator family transporter
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 50% identical to FIEF_CITK8: Cation-efflux pump FieF (fieF) from Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
KEGG orthology group: None (inferred from 95% identity to psa:PST_3715)MetaCyc: 48% identical to Zn2+/Fe2+/Cd2+ exporter (Escherichia coli K-12 substr. MG1655)
RXN0-6; TRANS-RXN0-200; TRANS-RXN0-244
Predicted SEED Role
"Cobalt-zinc-cadmium resistance protein" in subsystem Cobalt-zinc-cadmium resistance
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Compare to protein structures
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See L0GIN8 at UniProt or InterPro
Protein Sequence (296 amino acids)
>Psest_0573 cation diffusion facilitator family transporter (Pseudomonas stutzeri RCH2) MSINRDHARLMRRATAAALATAIVLALSKAVAWWLSGSVSLLAGLTDSLLDGAASLLNLL AVHYSLRPADDDHRYGHGKAEALAGLGQAAFICVSAILVGVQGVDRLLHPQPLGAQGVGI AVMLFSLVMTAVLLSYQHHVVKVTGSTAIRADSLHYRSDLLLNTSILVALILAGFGWERL DALFGIGIALYIFWSAITIVREAGAVLMDTELSPEISEQMQQLVCEVPGVHGCHDFRTRI SGTRWFVQLHLELPGELPLSQAHDLCVAVENAIHDRYPNAEVLVHADPLEVAPPKR