Protein Info for Psest_0567 in Pseudomonas stutzeri RCH2

Annotation: urea ABC transporter, urea binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 422 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details PF13458: Peripla_BP_6" amino acids 31 to 388 (358 residues), 240.3 bits, see alignment E=5.1e-75 TIGR03407: urea ABC transporter, urea binding protein" amino acids 32 to 405 (374 residues), 594.3 bits, see alignment E=3.7e-183 PF13433: Peripla_BP_5" amino acids 32 to 408 (377 residues), 548.8 bits, see alignment E=6e-169

Best Hits

KEGG orthology group: K01999, branched-chain amino acid transport system substrate-binding protein (inferred from 98% identity to psa:PST_3720)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GIN4 at UniProt or InterPro

Protein Sequence (422 amino acids)

>Psest_0567 urea ABC transporter, urea binding protein (Pseudomonas stutzeri RCH2)
MKRRPLLKSTLAASALMLSGLFPFTLQAAETIKVGILHSLSGTMAISETSLKDMALMTID
EINAKGGVLGKQLEPVVVDPASNWPLFAEKGRQLLTQDKVAVTFGCWTSVSRKSVLPVYE
ELDGLLFYPVQYEGEELSPNVFYTGAAPNQQAIPAVEYLMSEDGGSAERFFLLGTDYVYP
RTTNKILRAFLISKGVPESSIEEVYTPFGHSDYQTIVANIKKFSAGGKTAVVSTINGDSN
VPFYKELANQGLDATDVPVVAFSVGEEELRGIDTKPLVGHLAAWNYFQSVENPVNEAFVS
KWKAYAKAKNLPGADKAVTNDPMEATYVGIHMWAQAVEKAGTTDVGKVRDALAGQTFQAP
SGYTLTMDEKNHHLHKPVMIGEVQEDGQFSVVWETESPVRAQPWSPYIPGNDKKPDYAVK
SN