Protein Info for PGA1_c05680 in Phaeobacter inhibens DSM 17395

Annotation: Predicted membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 351 transmembrane" amino acids 61 to 79 (19 residues), see Phobius details amino acids 91 to 112 (22 residues), see Phobius details amino acids 223 to 240 (18 residues), see Phobius details amino acids 264 to 281 (18 residues), see Phobius details PF05128: DUF697" amino acids 189 to 346 (158 residues), 161.2 bits, see alignment E=9.3e-52

Best Hits

KEGG orthology group: K08990, putative membrane protein (inferred from 55% identity to rde:RD1_2073)

Predicted SEED Role

"GTP-binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7EJH4 at UniProt or InterPro

Protein Sequence (351 amino acids)

>PGA1_c05680 Predicted membrane protein (Phaeobacter inhibens DSM 17395)
MTRKDAVLFDLTDSATADTAPDVASAPPVPDLDGASSDLPQPALAQAAALASRRPSRLAR
WFWACLTALIGAVISVAAWDFVTGLIDRVPLLGWAITAGFAVAVLLALLMGLRELAALSR
LRRVESLRNAQPLLSTDPSAPAAGQPADATADLKAARSYVAGLERFYRGRKDLAWGLARL
GERKSDIMDADALLQLAEVELLAPLDARALRVVEGGARQVATVTALVPLALADVVTALVT
SLRMIRRIADIYGGRSGFFSSWRLIRAVLAHLVTTGAVAVGDDLLEPVLGGSILSKLSRR
FGEGLVNGALSARVGIAAMEVCRPMTFSKVQKPLTRKVIQRALTGLFTKDA