Protein Info for Psest_0521 in Pseudomonas stutzeri RCH2

Annotation: lytic murein transglycosylase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 432 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details TIGR02283: lytic murein transglycosylase" amino acids 63 to 355 (293 residues), 399.7 bits, see alignment E=3.9e-124 PF13406: SLT_2" amino acids 63 to 352 (290 residues), 399.8 bits, see alignment E=7e-124 PF01471: PG_binding_1" amino acids 373 to 428 (56 residues), 51.4 bits, see alignment 1e-17

Best Hits

KEGG orthology group: None (inferred from 91% identity to psa:PST_3772)

Predicted SEED Role

"Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-)" in subsystem Peptidoglycan Biosynthesis (EC 3.2.1.-)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.2.1.-

Use Curated BLAST to search for 3.2.1.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GEH2 at UniProt or InterPro

Protein Sequence (432 amino acids)

>Psest_0521 lytic murein transglycosylase (Pseudomonas stutzeri RCH2)
MYHTFVPVLLLRTLVAASAMSLVVACAAEPLAQSTLVSNAPPSTSSHSNTAAVDLVPESP
HLSFSQWRDQFRSEALAAGISAKTFDQAFAGVEPDPAVIAADRSQPEFTRPVWQYLEGAI
SPQRVRSGQRLLSEHAATLDRIEARYGVDRETLVAVWGLESSFGQIMGDKSVIRSLATLA
HEGRRPAFAKSQLIAALEILQHGDVAPQRMRGSWAGAMGQTQFIPTTYNTHAVDFDGDGK
RDIWNSSADALASAAHYLQSSGWKQGQPWGFEVQLPKGFDYALADNEIRKPLAEWRRLGL
HGLPSGQDEANASLLLPAGHRGPAFLIMDNFRAILRYNNSSAYALAIGLLAENFQGKGQV
AGSWPRGEQPLSRSERLELQERLVAQGFDPGTPDGIIGANTRKAIRGFQQRLGWPADGHP
TQELLGRLRAQP