Protein Info for Psest_0503 in Pseudomonas stutzeri RCH2

Annotation: Acyl dehydratase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 151 PF01575: MaoC_dehydratas" amino acids 12 to 112 (101 residues), 86.5 bits, see alignment E=5.4e-29

Best Hits

Swiss-Prot: 49% identical to ECH1_MYCBO: Probable enoyl-CoA hydratase 1 (BQ2027_MB0135) from Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)

KEGG orthology group: None (inferred from 80% identity to pae:PA4015)

MetaCyc: 46% identical to 4-chloro-3-hydroxybutyryl-CoA dehydratase (Salinispora tropica)
4.2.1.-

Predicted SEED Role

"MaoC domain protein"

MetaCyc Pathways

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GI73 at UniProt or InterPro

Protein Sequence (151 amino acids)

>Psest_0503 Acyl dehydratase (Pseudomonas stutzeri RCH2)
MPQVPVAQLKDYIGKELGHSEWLTIDQERVNQFADCTGDHQFIHIDTEKAAQTPFGGTIA
HGFLSLSLLPMLSGDLLVVPEGTKMGVNYGLDSLRFIQPVRVGSRVRLGLTLIDAHEKNP
GQWLLKARAVMEIEGSDKPAYIAETLALCIL