Protein Info for Psest_0473 in Pseudomonas stutzeri RCH2

Annotation: Glycerol-3-phosphate dehydrogenase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 391 PF01266: DAO" amino acids 8 to 314 (307 residues), 67.1 bits, see alignment E=3.2e-22 PF00890: FAD_binding_2" amino acids 8 to 54 (47 residues), 27.9 bits, see alignment 2.2e-10

Best Hits

Swiss-Prot: 77% identical to Y4991_PSEAE: Probable FAD-dependent oxidoreductase PA4991 (PA4991) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

KEGG orthology group: None (inferred from 94% identity to psa:PST_3820)

Predicted SEED Role

"Oxidoreductase, FAD-binding"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GI53 at UniProt or InterPro

Protein Sequence (391 amino acids)

>Psest_0473 Glycerol-3-phosphate dehydrogenase (Pseudomonas stutzeri RCH2)
MPEPLSTDVLIVGGGVAGLWLNARLRRQGFATLLVDKGTLGGGQSVKSQGIIHGGTKYAL
SGALTGASEAIADMPRRWREALEGTGELDLSGVRLLSDAHYLWSPGTLAGNLTSFFASKA
VRSRVGQVKGEELPPALQHPEFKGKVYRLSELVLDVPSLIARLAELAGDSLLAGQQIEPL
HDGGELVGLRVDGREIRAQRIVFSAGGGIAELLASLGLQQPAMQRRPLHMVIVKAPTLKP
LYAHCLGGGTKPRITVTSHPAADGEWVWYLGGDLAEADGVARDEASQIAAAKKELAELVP
WIDLSAAHWATLRIDRAEPAQSALARPDNAFLAEQGRLLVGWPTKLALSPDFSDRVEAAL
ARDGIRPGQHPTLPELPRPPLTGPFWEGLLP