Protein Info for Psest_0462 in Pseudomonas stutzeri RCH2

Annotation: Lipid A core - O-antigen ligase and related enzymes

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 382 transmembrane" amino acids 6 to 24 (19 residues), see Phobius details amino acids 30 to 47 (18 residues), see Phobius details amino acids 59 to 77 (19 residues), see Phobius details amino acids 87 to 104 (18 residues), see Phobius details amino acids 111 to 132 (22 residues), see Phobius details amino acids 151 to 168 (18 residues), see Phobius details amino acids 176 to 194 (19 residues), see Phobius details amino acids 200 to 216 (17 residues), see Phobius details amino acids 222 to 243 (22 residues), see Phobius details amino acids 268 to 272 (5 residues), see Phobius details amino acids 293 to 317 (25 residues), see Phobius details amino acids 326 to 350 (25 residues), see Phobius details amino acids 357 to 375 (19 residues), see Phobius details PF04932: Wzy_C" amino acids 184 to 309 (126 residues), 49.2 bits, see alignment E=2.5e-17

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GIE0 at UniProt or InterPro

Protein Sequence (382 amino acids)

>Psest_0462 Lipid A core - O-antigen ligase and related enzymes (Pseudomonas stutzeri RCH2)
MLPACLPAWLALGFAWFLLGMMFLPSSKLYHQGLILLFWLPGMAAWLPGIRARLHWDRWL
LAGLLACVVWALLSVSWGGDSKRFKEMFYVLLTAQAFVVLAGLYREHIWRLLVCLAMIGS
LGALWSIIDFYLLQGRPLGNRLVGSGLLDHPILAAHLMGALSVLLLGLRSRLPEALPRWT
WWVACLAYFAFIVLTRSKGPLLALIVACLIIPICAPSRGRILLALLLLGGAIMAVCLSSE
ILLRGGLSYRPDLLLGAWERFLLHPWLGLGVGASYELEVAAIGATFEHAHNFFAHLALQL
GLPGLVLWLSTLLVVLWRGWSSRASAAGLALCGLLGFSVVALMTDGIGPWVKPREEWFTV
WLPIFLCLALFAGRADERSSPT