Protein Info for Psest_0442 in Pseudomonas stutzeri RCH2

Annotation: ATPases of the AAA+ class

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 328 PF00004: AAA" amino acids 126 to 252 (127 residues), 104.3 bits, see alignment E=3.4e-34

Best Hits

KEGG orthology group: None (inferred from 75% identity to ttu:TERTU_4357)

Predicted SEED Role

"Cell division protein FtsH (EC 3.4.24.-)" in subsystem Bacterial Cell Division (EC 3.4.24.-)

Isozymes

Compare fitness of predicted isozymes for: 3.4.24.-

Use Curated BLAST to search for 3.4.24.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GIC3 at UniProt or InterPro

Protein Sequence (328 amino acids)

>Psest_0442 ATPases of the AAA+ class (Pseudomonas stutzeri RCH2)
MANGKILRQLFKAGTAGDTDAFRLASKAVIEEERQKQHHLLANDLEQILYGSDLNFKASS
STSRTHYDVPVDKERGLPLLDIRSPKRSLDEVILPPSSSAALEEILEENRRADVLRSYGM
KPAGKVIFFGPPGCGKTLAAEVVAFELDRPLAIVRLDALVSSFLGETAANLRKVFDFIAQ
HPFVVLFDEFDAIGKERGDSGDHGELRRVVNAVLQMMDSYEGRSLILAATNHEKILDTAI
WRRFDESIEFPLPDEKQLKDILSLKLRGIRRQFEIDDKEVLTEFKGKSGADVERVIRRAA
KRMILREQEFLTLKELKSALAREDLRKS