Protein Info for Psest_4354 in Pseudomonas stutzeri RCH2

Annotation: ATP synthase, F1 beta subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 458 TIGR01039: ATP synthase F1, beta subunit" amino acids 3 to 458 (456 residues), 844.3 bits, see alignment E=1.2e-258 PF02874: ATP-synt_ab_N" amino acids 6 to 71 (66 residues), 64.9 bits, see alignment E=1.2e-21 PF00006: ATP-synt_ab" amino acids 128 to 340 (213 residues), 241.4 bits, see alignment E=1.3e-75 PF22919: ATP-synt_VA_C" amino acids 348 to 425 (78 residues), 55.2 bits, see alignment E=9.2e-19

Best Hits

Swiss-Prot: 99% identical to ATPB_PSEU5: ATP synthase subunit beta (atpD) from Pseudomonas stutzeri (strain A1501)

KEGG orthology group: K02112, F-type H+-transporting ATPase subunit beta [EC: 3.6.3.14] (inferred from 99% identity to psa:PST_4191)

MetaCyc: 86% identical to ATP synthase F1 complex subunit beta (Escherichia coli K-12 substr. MG1655)

Predicted SEED Role

"ATP synthase beta chain (EC 3.6.3.14)" in subsystem F0F1-type ATP synthase (EC 3.6.3.14)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.6.3.14

Use Curated BLAST to search for 3.6.3.14

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GSP4 at UniProt or InterPro

Protein Sequence (458 amino acids)

>Psest_4354 ATP synthase, F1 beta subunit (Pseudomonas stutzeri RCH2)
MSSGRIVQIIGAVIDVEFPRDLVPNVYDALKVQGAETTLEVQQQLGDGIVRTIAMGSTEG
LKRGLDVVNTGTGISVPVGKQTLGRIMDVLGNPIDEAGPIGEEERWTIHRAAPSYAEQAG
GNELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAMEHSGYSVFAGVGE
RTREGNDFYHEMKDSNVLDKVALVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLLFV
DNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKNGSITSVQAVYVPAD
DLTDPSPATTFAHLDATVVLSRDIASLGIYPAVDPLDSTSRQLDPLVIGQEHYDTARGVQ
YVLQRYKELKDIIAILGMDELSETDKQLVSRARKIQRFLSQPFFVAEVFTGSPGKYVPLK
ETIRGFSGILSGEYDHLPEQAFYMVGSIDEAIEKAKKL