Protein Info for PGA1_c04370 in Phaeobacter inhibens DSM 17395

Annotation: putative glycosyltransferase protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 344 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF20706: GT4-conflict" amino acids 130 to 331 (202 residues), 44.5 bits, see alignment E=2.2e-15 PF13692: Glyco_trans_1_4" amino acids 166 to 304 (139 residues), 80.5 bits, see alignment E=2.9e-26 PF00534: Glycos_transf_1" amino acids 182 to 316 (135 residues), 71.1 bits, see alignment E=1.7e-23 PF13524: Glyco_trans_1_2" amino acids 242 to 332 (91 residues), 29 bits, see alignment E=2.1e-10

Best Hits

Predicted SEED Role

"glycosyl transferase, group 1 family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7DM07 at UniProt or InterPro

Protein Sequence (344 amino acids)

>PGA1_c04370 putative glycosyltransferase protein (Phaeobacter inhibens DSM 17395)
MARNLMGLLSGSGALVTLASELRIFDKSGDAERQAILRAKAAQEIDRICAGVAATPKAER
PDLWLTYHNYYKAPDLIGPTVASRFAIPYVQVESTRAKKRLSGPWSRFAQAAHDAADAAS
VIFYLTEQDHETLLRDRYRDQHLVHLPPFLPDHRLPEPSDRSGPMLCVGMMREGDKLTSY
RLLADALAQVSQPWQLDIVGDGPARPEVEQVMSRFGSKVRFLGMLDREALGVIYRQASVF
VWPGVNEAFGMVYLEAQSHGIPVLAQDRPGLRDVVTRWELPALTPPPDSGPEGYAQALTQ
MLDDPALCDRQAKHVRSRVADRHLAPVAAQRLWSTLLPLLEIPK