Protein Info for Psest_4312 in Pseudomonas stutzeri RCH2

Annotation: anion transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 495 transmembrane" amino acids 12 to 35 (24 residues), see Phobius details amino acids 41 to 59 (19 residues), see Phobius details amino acids 66 to 85 (20 residues), see Phobius details amino acids 105 to 125 (21 residues), see Phobius details amino acids 144 to 161 (18 residues), see Phobius details amino acids 167 to 185 (19 residues), see Phobius details amino acids 192 to 214 (23 residues), see Phobius details amino acids 234 to 257 (24 residues), see Phobius details amino acids 291 to 309 (19 residues), see Phobius details amino acids 316 to 334 (19 residues), see Phobius details amino acids 341 to 362 (22 residues), see Phobius details amino acids 373 to 397 (25 residues), see Phobius details amino acids 403 to 422 (20 residues), see Phobius details amino acids 429 to 448 (20 residues), see Phobius details amino acids 469 to 491 (23 residues), see Phobius details PF00939: Na_sulph_symp" amino acids 20 to 495 (476 residues), 409.4 bits, see alignment E=2.5e-126 TIGR00785: transporter, divalent anion:Na+ symporter (DASS) family" amino acids 34 to 489 (456 residues), 220.4 bits, see alignment E=1.9e-69 PF03600: CitMHS" amino acids 55 to 435 (381 residues), 91 bits, see alignment E=8.4e-30

Best Hits

Swiss-Prot: 72% identical to MEMP_CUPNH: Membrane protein (H16_A0667) from Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337)

KEGG orthology group: None (inferred from 79% identity to pfl:PFL_2538)

Predicted SEED Role

"membrane protein, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GRZ3 at UniProt or InterPro

Protein Sequence (495 amino acids)

>Psest_4312 anion transporter (Pseudomonas stutzeri RCH2)
MSDTPNVVLRQGLLGIPIGLLVALLALIGVLLMPLPADLPVAGQRVLAILVFAVVVWITE
AVSYEVSAIMITALLAFLVGTAPTLENPEVVYGTSKAIGMGLSGFANPALALVAGALFIA
AAMTLTGLDRRIALMTLSRVGTSSRHILGGTLVVIVLLSLVVPSATARAACVVPIMLGII
TAFGIDKRSNFAAGMMIIVAQGTSIWNIGIQTAAAQNLLLVGFMDKLLGERVSWIDWLIA
GAPWAVLMSFVLLFIVLKLLPPETERIAGGKEAVARSLAELGPMTSAQKRLLAVSIGLLL
CWATEGKLHSFDTTSTTYAGLVILMLPRIGVMNWKEVQTRVPWGTVIVFGVGISLGTVLL
TTQAGQWLGAQVVAHTGLGVVGPLGIFAILGAFLIVIHLGFASATALTSAMLPILISVLL
SLPGDFSRLGMTMLLGFVVSYGFILPINAPQNMVCLGTETFSARQFAKVGVLVTLIGYLS
MLLFAVTWWRWLGWI