Protein Info for Psest_4304 in Pseudomonas stutzeri RCH2

Annotation: Glycosyltransferases, probably involved in cell wall biogenesis

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 466 transmembrane" amino acids 6 to 30 (25 residues), see Phobius details amino acids 237 to 253 (17 residues), see Phobius details amino acids 345 to 405 (61 residues), see Phobius details PF13641: Glyco_tranf_2_3" amino acids 56 to 323 (268 residues), 71.3 bits, see alignment E=2.6e-23 PF00535: Glycos_transf_2" amino acids 59 to 201 (143 residues), 76.7 bits, see alignment E=4.3e-25 PF13632: Glyco_trans_2_3" amino acids 166 to 387 (222 residues), 58.1 bits, see alignment E=2.2e-19

Best Hits

KEGG orthology group: None (inferred from 99% identity to psa:PST_0048)

Predicted SEED Role

"glycosyl transferase, family 2"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GPT6 at UniProt or InterPro

Protein Sequence (466 amino acids)

>Psest_4304 Glycosyltransferases, probably involved in cell wall biogenesis (Pseudomonas stutzeri RCH2)
MTVDWLWWLQVAFILYFLLLNGMYLLLNLLSMGSLMGYIRQRAETGELAPYLGVEPPVSV
LMPAFNEEATIRTSVRSMLQLQYPEFEIVVINDGSKDRTLAVLIEEFDLVPHPEPLRQAV
AHQPVQAIYRSRRYANLRVVDKANGGKADALNAGINAARYGLFCGVDADSILQRDSLLRV
VQPFLEDERTIAAGGTVRIANGSQVRGGFLIKAGLPRNWLARFQIVEYLRAFLFGRLGWS
PLNAVLIISGAFGLFDRERVMAVGGYRTDTVGEDMELVVRLHRYHREKRIPYRIRYLPDP
ICWTECPEDLGTLGRQRSRWQRGLAESLGRHARLAFSLRGGTPGWLAWPFMALFEWIGPL
IELVGYGFMLAGFAFGAVSYAALATFLLVAIGMGILLSVNGLLLETMSFRVYSRRRDMLQ
LFLMAVLENFGYRQLNTAWRCRGLWQWFSRRKHQWGAMRRSGSWGQ