Protein Info for Psest_4255 in Pseudomonas stutzeri RCH2

Annotation: conserved hypothetical integral membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 382 transmembrane" amino acids 139 to 155 (17 residues), see Phobius details amino acids 176 to 200 (25 residues), see Phobius details amino acids 220 to 240 (21 residues), see Phobius details amino acids 261 to 307 (47 residues), see Phobius details amino acids 319 to 339 (21 residues), see Phobius details amino acids 359 to 378 (20 residues), see Phobius details TIGR00056: ABC transport permease subunit" amino acids 134 to 378 (245 residues), 225.1 bits, see alignment E=5.9e-71 PF02405: MlaE" amino acids 168 to 375 (208 residues), 234.8 bits, see alignment E=4.1e-74

Best Hits

KEGG orthology group: K02066, putative ABC transport system permease protein (inferred from 96% identity to psa:PST_0091)

Predicted SEED Role

"ABC-type transport system involved in resistance to organic solvents, permease component USSDB6A"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GTV0 at UniProt or InterPro

Protein Sequence (382 amino acids)

>Psest_4255 conserved hypothetical integral membrane protein (Pseudomonas stutzeri RCH2)
MSATLSSSPGSVTLDQGASPLRARILGDWTLAHYAALRREVQRLRTRIDERSQIELSGLG
ALDTAGAGLLVELLGRERIAAIEAWAPQLPAERLALLRTVATALDQPDAAELPRGYEFGD
LLAHIGRTVTSVWKQQRELLGFTGLTLQTLLLTLPRPRRWRLTSLAVHIEQTGLDAVPIV
ALLTFLVGAVVAFLGATVLADFGATIYTVNLVGFSFLREFGVLLAAILLAGRSASAFAAQ
IGSMKSNEEIDAIRTLGLSPIELLVLPRVLAMLITLPILTFVGMLSGIAGGLVVCVLALD
ISPTMFFTIMARDIAVSHFLVGLAKAPVFAFVIAVIGCLEGFKVSGSAQSVGEHTTSSVV
QAIFMVILLDAIAALFFMEMGW