Protein Info for Psest_4195 in Pseudomonas stutzeri RCH2

Annotation: general secretion pathway protein L

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 377 transmembrane" amino acids 41 to 60 (20 residues), see Phobius details amino acids 231 to 252 (22 residues), see Phobius details TIGR01709: type II secretion system protein L" amino acids 4 to 375 (372 residues), 222 bits, see alignment E=6.8e-70 PF05134: T2SSL" amino acids 42 to 218 (177 residues), 95.1 bits, see alignment E=4.4e-31 PF12693: GspL_C" amino acids 226 to 376 (151 residues), 115 bits, see alignment E=3.1e-37

Best Hits

KEGG orthology group: K02461, general secretion pathway protein L (inferred from 90% identity to psa:PST_0132)

Predicted SEED Role

"General secretion pathway protein L"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GTF1 at UniProt or InterPro

Protein Sequence (377 amino acids)

>Psest_4195 general secretion pathway protein L (Pseudomonas stutzeri RCH2)
MDCLFLPADSPARLDGATRVYWLPKDGPGRWQPLADCGGGSGAISLILPAEVCSFFAISL
PTRKARWMQQALAYAAEELLAENVDDLHLALGETLPDGRQRVVAIRRQLLAGWLEQLREL
GLLIVAIHVDADLLPREDTQLLFVGERGLLGGIGETRMAFASEDWPQLSAFCPVPWHAQG
DAAEAPAVVEGYRQVEDPYAFLVSQRAAAINLAQGDFAVEVGNTGLGYWKPLFAVAGLIL
LVQLGFNLSQAWYFQRQGDAYADASLALYRELFPEDIRIVNMRAQFDDHLARGSGGQAGF
LRLLDHAAAALEDGIPVTIGQLDYNQDRGDLALQVQAMDFATLETLRRRLGEAGQSVQLG
SASREGDGVSARVVIGG