Protein Info for Psest_4166 in Pseudomonas stutzeri RCH2

Annotation: Flagellar biosynthesis/type III secretory pathway chaperone

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 146 PF05130: FlgN" amino acids 16 to 136 (121 residues), 55.1 bits, see alignment E=5.7e-19

Best Hits

KEGG orthology group: K02399, flagella synthesis protein FlgN (inferred from 57% identity to pmy:Pmen_4411)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GRK7 at UniProt or InterPro

Protein Sequence (146 amino acids)

>Psest_4166 Flagellar biosynthesis/type III secretory pathway chaperone (Pseudomonas stutzeri RCH2)
MNQRDKLLAVVAIDLEQDCDDYLALRDLMQALYAFLLERDSVEIDRLNLQITTRVETIGA
RAQRRAKVLSAFRLQADADGMQRLLGSYPDEQAVRLRQSWQQLGVLASQCQQINERNGKL
LAMHHEILGQLLAGSHDARLYQPQMY