Protein Info for Psest_4137 in Pseudomonas stutzeri RCH2

Annotation: Uncharacterized iron-regulated membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 375 signal peptide" amino acids 1 to 38 (38 residues), see Phobius details transmembrane" amino acids 147 to 170 (24 residues), see Phobius details amino acids 191 to 213 (23 residues), see Phobius details amino acids 345 to 366 (22 residues), see Phobius details PF03929: PepSY_TM" amino acids 11 to 368 (358 residues), 220.3 bits, see alignment E=2.6e-69

Best Hits

KEGG orthology group: None (inferred from 93% identity to psa:PST_0146)

Predicted SEED Role

"putative iron-regulated membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GS36 at UniProt or InterPro

Protein Sequence (375 amino acids)

>Psest_4137 Uncharacterized iron-regulated membrane protein (Pseudomonas stutzeri RCH2)
MQAVTLRRWGWVHKWSSLVSTLFILMLCLTGLPLVFSHEIDHLTGNEIEAPAMPEGTPRA
AVDRVAAEAVKAYPGLVPLYFFAEEDDPDVWYVKLDTRVDTDESASTLILSDARTAEVLG
APNIDEGFMNVMYRLHVDLYAGLAGKLFLGFMGLLLMVAIVSGVVLYAPFMRKLRFGEVR
QERTARTRWLDLHNLLGIVTLVWALAVGFTGVINTWADLIFQAWQAEQVAALQAGKTRVL
LTAEASGAPAADGSLQTAVDRVLAAAPGMAVAMIAYPGTLRATPEHVAVILRGDTPLTSR
LTQALLVDPADGAVLEAGPRPWYVTALQLSEPLHFGDYGGLPLKMLWALLDVLTIVVLAS
GLYLWLKRGATEVRT