Protein Info for PGA1_c04140 in Phaeobacter inhibens DSM 17395

Annotation: putative acyl-CoA dehydrogenase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 381 PF02771: Acyl-CoA_dh_N" amino acids 6 to 84 (79 residues), 45.4 bits, see alignment E=1.9e-15 PF02770: Acyl-CoA_dh_M" amino acids 125 to 201 (77 residues), 41.6 bits, see alignment E=2.4e-14 PF00441: Acyl-CoA_dh_1" amino acids 237 to 372 (136 residues), 78.7 bits, see alignment E=1e-25 PF08028: Acyl-CoA_dh_2" amino acids 247 to 351 (105 residues), 25.1 bits, see alignment E=3.8e-09

Best Hits

KEGG orthology group: None (inferred from 49% identity to bge:BC1002_4076)

Predicted SEED Role

"Acyl-CoA dehydrogenase family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7EJ24 at UniProt or InterPro

Protein Sequence (381 amino acids)

>PGA1_c04140 putative acyl-CoA dehydrogenase (Phaeobacter inhibens DSM 17395)
MNFQLTEERQMLQDSLRRFLADRYTVTARNKAIADPSGYSSAIWTQLADLGVLGALLPEA
VGGYGGAGFDIATIFEELGRAGVVEPVLDTAVLCGSLLCGPHDAQPLPRDRQYLERLIAG
DLQLAFAHGEPASRYERTWVETTATVGGQDIVLTGRKSVVVNAEAAELLIVSAREGGASG
DRDGLSLFLVDPKTAGVRMQGSALLAGGRAGEIELDGVRLSPSARLGAAGGAAVRVESAL
AAAEVALAAEALGAMETATRLTMDYLTTRQQFGRPIGTFQALQHRVAEMLIEVEQARSAV
INAAGHLEGAPQVRDRHIAAARNLIGRTGRHIAEEAIQLHGGIAMTAEYELAHIAKRIVM
SEHRFGDADTQLERFIDLSAA