Protein Info for Psest_4100 in Pseudomonas stutzeri RCH2

Annotation: Uncharacterized protein conserved in bacteria

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 280 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details transmembrane" amino acids 93 to 113 (21 residues), see Phobius details PF04280: Tim44" amino acids 156 to 277 (122 residues), 30.3 bits, see alignment E=2.1e-11

Best Hits

KEGG orthology group: None (inferred from 96% identity to psa:PST_0171)

Predicted SEED Role

"putative membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GT67 at UniProt or InterPro

Protein Sequence (280 amino acids)

>Psest_4100 Uncharacterized protein conserved in bacteria (Pseudomonas stutzeri RCH2)
MQRVLSIFMALCISLTFALDAHAKRFGGGKSFGSAPSHQTRQAPQQTQAAPNQAGRQTPA
AASGASRWLGPLAGLAAGGLLASMFMGDGFEGIQFMDILIFGVIAFLLFRFLAARRRQQQ
PAMAGHAPMQREMPQQPATSIFGGSAAPVAAAPVINAPAWFNEQSFVAAAREHFLSLQQH
WDANEMDKISEFVTPQLLGFLKQERAEIGDAYQSTYIDDLQIQLDGVDDDAEKTTATLTF
SGVSKTSRFDQGEPFSESWRMERAQGENQPWLVAGIRQNA