Protein Info for Psest_4083 in Pseudomonas stutzeri RCH2

Annotation: Predicted permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 313 transmembrane" amino acids 6 to 23 (18 residues), see Phobius details amino acids 28 to 47 (20 residues), see Phobius details amino acids 57 to 79 (23 residues), see Phobius details amino acids 90 to 112 (23 residues), see Phobius details amino acids 124 to 144 (21 residues), see Phobius details amino acids 157 to 176 (20 residues), see Phobius details amino acids 191 to 211 (21 residues), see Phobius details amino acids 221 to 241 (21 residues), see Phobius details amino acids 249 to 271 (23 residues), see Phobius details amino acids 280 to 304 (25 residues), see Phobius details PF05982: Sbt_1" amino acids 5 to 305 (301 residues), 375.8 bits, see alignment E=8.7e-117

Best Hits

KEGG orthology group: K07086, (no description) (inferred from 98% identity to psa:PST_0188)

Predicted SEED Role

"putative sodium-dependent bicarbonate transporter" in subsystem CO2 uptake, carboxysome

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GP89 at UniProt or InterPro

Protein Sequence (313 amino acids)

>Psest_4083 Predicted permease (Pseudomonas stutzeri RCH2)
MGIDPVVLFFVFGLFAGLVKSELKLPPALYETLSIVLLLAIGLHGGVELAEQASAALLGQ
SLLVLALGVLLPILAFVLLRGLRFDRVNAAAVAAHYGSVSAGTFAVVVAYLAAREIFFES
YMPLFVAILEIPAILVGILLAKGVSRETDWKELGREIFLGKSIMLLLGGLLIGAIAGKEA
IKPLEPLYTSMFKPVLAFFLLEMGLIASGQLGSLKRYGIKLAAFALIMPLIGALIGAMLA
RFMGLSLGGTAMLATLAASASYIAVPAAMRLAVPEANPSLSLTASLGITFPFNILIGIPL
YLALAERLIAWGF