Protein Info for Psest_4065 in Pseudomonas stutzeri RCH2

Annotation: Uracil-DNA glycosylase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 227 PF03167: UDG" amino acids 39 to 220 (182 residues), 69.6 bits, see alignment E=1.6e-23

Best Hits

KEGG orthology group: None (inferred from 86% identity to psa:PST_0206)

Predicted SEED Role

"FIG00509706: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GT40 at UniProt or InterPro

Protein Sequence (227 amino acids)

>Psest_4065 Uracil-DNA glycosylase (Pseudomonas stutzeri RCH2)
MTLPTEIRQALRELAAHTDGIDLPIYQAFERDPLEPIIGLGDADAPLCFFGRDPGREEVR
HGEPFIGAGGQIVRRVLYRHLHGEEMPDFAAGRALGRHYFWINTVPYKPVGNKAWSMAVK
RRFHPLVRQLLVDSWHGRQIVTLGREAFLWFGIDQPPAERRRLEAFWQREDRFTASLDVE
LQDAQGHARSFTLHPLPHPSPLNQTWFKRFPALLEARLCQLDGQLKP